writeCWL: Write CWL

In hubentu/Rcwl: An R interface to the Common Workflow Language

Write CWL

Description

write 'cwlProcess' to cwl and yml.

Usage

writeCWL(
  cwl,
  prefix = deparse(substitute(cwl)),
  outdir = tempfile(),
  docker = TRUE,
  libPaths = TRUE,
  ...
)

Arguments

cwl	A 'cwlProcess' or 'cwlWorkflow' object.
prefix	The prefix of '.cwl' and '.yml' files to be generated.
outdir	The output directory for the '.cwl' and '.yml' files.
docker	Whether to use docker.
libPaths	Whether to add local R libaray paths to R script.
...	Other options from 'yaml::write_yaml'.

Value

A CWL file and A YML file.

Examples

input1 <- InputParam(id = "sth")
echo <- cwlProcess(baseCommand = "echo",
                 inputs = InputParamList(input1))
writeCWL(echo)

hubentu/Rcwl documentation built on May 9, 2024, 2:14 a.m.