animalcules: Interactive microbiome analysis toolkit

Description Usage Arguments Value Examples

Data visualization by pie chart / box plot

filter_summary_pie_box(
  MAE,
  samples_discard = NULL,
  filter_type,
  sample_condition
)

`MAE`	A multi-assay experiment object
`samples_discard`	The list of samples to filter
`filter_type`	Either 'By Microbes' or 'By Metadata'
`sample_condition`	Which condition to check e.g. 'SEX'

A plotly object

data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
toy_data <- readRDS(data_dir)
result <- filter_summary_pie_box(toy_data,
                                 samples_discard = c('subject_2', 'subject_4'),
                                 filter_type = 'By Microbes',
                                 sample_condition = 'SEX')
result