DMR_SixWeekvsTwoWeek: Transcriptome location and read counts of 200 candidate DMRs.
In haowulab/TRESS: Toolbox for mRNA epigenetics sequencing analysis
DMR_SixWeekvsTwoWeek R Documentation
Transcriptome location and read counts of 200 candidate DMRs.
Description
A data list which consists of the transcriptome location
and read counts of 200 candidate DMRs from 8 mouse brain samples.
Each sample has two paired IP and input replicates.
It also contains the size factor of each
sample and the
estimated methylation ratio in each sample
for 200 canidate DMRs.
Usage
data(DMR_SixWeekvsTwoWeek)
Format
A list with 4 elements
- Regions
A dataframe of 200 obs and 5 variables,
containing the transcriptome location for 200 candidate
DMRs from two mouse brain regions at two time points.
- Counts
A dataframe of 200 obs and 16 variables,
caontaining candidate DMR read counts in each
paired IP and input replicate of all 8 samples.
- sf
A numerical vector,
containing the size factors of all samples
estimated from the whole transcriptome
- MeRatio
-
A data matrix of 200-by-8, containing the
estimated methylation ratio
for each sample.
...
haowulab/TRESS documentation built on Aug. 27, 2022, 7:11 p.m.
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| DMR_SixWeekvsTwoWeek | R Documentation |
Transcriptome location and read counts of 200 candidate DMRs.
Description
A data list which consists of the transcriptome location and read counts of 200 candidate DMRs from 8 mouse brain samples. Each sample has two paired IP and input replicates. It also contains the size factor of each sample and the estimated methylation ratio in each sample for 200 canidate DMRs.
Usage
data(DMR_SixWeekvsTwoWeek)
Format
A list with 4 elements
- Regions
A dataframe of 200 obs and 5 variables, containing the transcriptome location for 200 candidate DMRs from two mouse brain regions at two time points.
- Counts
A dataframe of 200 obs and 16 variables, caontaining candidate DMR read counts in each paired IP and input replicate of all 8 samples.
- sf
A numerical vector, containing the size factors of all samples estimated from the whole transcriptome
- MeRatio
-
A data matrix of 200-by-8, containing the estimated methylation ratio for each sample.
...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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