cytof_colorPlot: Plot the data with color-coded marker values

In haoeric/cytofkit_devel: cytofkit: an integrated mass cytometry data analysis pipeline

Description

Plot the data with color-coded marker values

Usage

cytof_colorPlot(data, xlab, ylab, zlab, colorPalette = c("bluered",
  "spectral1", "spectral2", "heat"), pointSize = 1, removeOutlier = TRUE)

Arguments

data	A dataframe containing the xlab, ylab and zlab.
xlab	The column name of data for x lab.
ylab	The column name of data for y lab.
zlab	The column name of data for z lab.
colorPalette	Color Palette.
pointSize	The size of the point.
removeOutlier	If remove the outliers.

Value

A ggplot object.

Examples

x <- c(rnorm(100, mean = 1), rnorm(100, mean = 3), rnorm(100, mean = 9))
y <- c(rnorm(100, mean = 2), rnorm(100, mean = 8), rnorm(100, mean = 5))
c <- rnorm(300, 10, 5)
data <- data.frame(dim1 = x, dim2 = y, marker = c)
cytof_colorPlot(data = data, xlab = "dim1", ylab = "dim2", zlab = "marker")

haoeric/cytofkit_devel documentation built on May 17, 2019, 2:29 p.m.