inst/unitTests/test_lncRNA_mode.R

In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation

test_lncRNA_mode <- function(){

  data(MET.data)
  data(lncRNA.data)
  data(LUAD.sample.annotation)

  EpiMixResults <- EpiMix(methylation.data = MET.data,
                         gene.expression.data = lncRNA.data,
                         mode = "lncRNA",
                         sample.info = LUAD.sample.annotation,
                         group.1 = "Cancer",
                         group.2 = "Normal",
                         met.platform = "HM450",
                         OutputRoot =  tempdir())

  RUnit::checkEquals(nrow(EpiMixResults$FunctionalPairs), 5)

}