TarSeqQC-package: TarSeqQC: Targeted Sequencing Experiment Quality Control R...

In gamerino/TarSeqQC: TARgeted SEQuencing Experiment Quality Control

Description

The package models targeted sequencing experiment output using previous packages. This package includes the new following features:

1. Panel model:

   • Model customizable feature panels.

   • Evaluation of the sequencing run performance at median or coverage level for each feature.

   • Exploration of sequenced features.

2. Quality Control of the sequencing run:

   • General overview of the run performance.

   • Statistical indicators at median or coverage level.

   • Xlsx report.

3. Customizable scan bam file parameters.

4. Customizable pileup build parameters.

5. Incorporation of fasta sequence.

6. Fast exploration of read profile for particular features or genomic regions, coloring SNPs occurrences.

Author(s)

Gabriela A. Merino [e-mail], Cristobal Fresno [e-mail], Yanina Murua [e-mail], Andrea S. Llera [e-mail] and Elmer A. Fernandez [e-mail]

gamerino/TarSeqQC documentation built on Feb. 3, 2020, 9:19 p.m.