fetchDataHmChimp: Example output comparing human and chimpanzee data using...
In ferygood/TEKRABber: An R package estimates the correlations of orthologs and transposable elements between two species
fetchDataHmChimp R Documentation
Example output comparing human and chimpanzee data using orhtologScale()
Description
An output list of data contains 7 elements after using orthologScale(),
including (1) orthology table comparing human and chimpanzee. (2) scaling
factor for orthologous genes (3) gene count table from reference species (4)
gnee count table from species you want to compare (5) scaling factor for TEs
(6) TE count table from reference species (7) TE count table from the
species you want to compare. The aim to provide this dataset is to save
time for user running the vignettes and give a
template for demonstration.
Usage
data(fetchDataHmChimp)
Format
An object contains 2 elements:
- orthologTable
orthology information from Ensembl
- scaleFactor
scaling factor to normalize data
Examples
data(fetchDataHmChimp)
fetchData <- fetchDataHmChimp
fetchData$orthologTable
fetchData$scaleFactor
ferygood/TEKRABber documentation built on July 31, 2024, 6:36 p.m.
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| fetchDataHmChimp | R Documentation |
Example output comparing human and chimpanzee data using orhtologScale()
Description
An output list of data contains 7 elements after using orthologScale(), including (1) orthology table comparing human and chimpanzee. (2) scaling factor for orthologous genes (3) gene count table from reference species (4) gnee count table from species you want to compare (5) scaling factor for TEs (6) TE count table from reference species (7) TE count table from the species you want to compare. The aim to provide this dataset is to save time for user running the vignettes and give a template for demonstration.
Usage
data(fetchDataHmChimp)
Format
An object contains 2 elements:
- orthologTable
orthology information from Ensembl
- scaleFactor
scaling factor to normalize data
Examples
data(fetchDataHmChimp)
fetchData <- fetchDataHmChimp
fetchData$orthologTable
fetchData$scaleFactor
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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