tests/testthat/_snaps/corrOrthologTE.md

In ferygood/TEKRABber: An R package estimates the correlations of orthologs and transposable elements between two species

corrOrthologTE return the correct correlation result

Code
  controlCorr
Output
             geneName teName         coef      pvalue      padj
  1   ENSG00000180263    ALU -0.661453122 0.224065183 0.5630971
  2   ENSG00000180263  AluJb  0.894514933 0.040469375 0.3805582
  3   ENSG00000180263  AluJo  0.027828085 0.964572756 0.9963484
  4   ENSG00000180263  AluJr -0.741333663 0.151645875 0.5444463
  5   ENSG00000180263 AluJr4  0.683441766 0.203344878 0.5630971
  6   ENSG00000180263  AluSc -0.653020107 0.232157605 0.5630971
  7   ENSG00000180263 AluSc5  0.874278077 0.052491144 0.3845701
  8   ENSG00000180263 AluSc8 -0.169809767 0.784835105 0.9497359
  9   ENSG00000180263  AluSg  0.390173659 0.516124925 0.7269365
  10  ENSG00000180263 AluSg1  0.865572278 0.057957580 0.3845701
  11  ENSG00000185985    ALU -0.953661938 0.011890463 0.1981744
  12  ENSG00000185985  AluJb  0.715450495 0.174222804 0.5444463
  13  ENSG00000185985  AluJo  0.598394895 0.286393154 0.5630971
  14  ENSG00000185985  AluJr -0.747704909 0.146230260 0.5444463
  15  ENSG00000185985 AluJr4  0.913172941 0.030309437 0.3367715
  16  ENSG00000185985  AluSc -0.077264066 0.901722303 0.9963484
  17  ENSG00000185985 AluSc5  0.647630196 0.237370837 0.5630971
  18  ENSG00000185985 AluSc8 -0.517752456 0.371545014 0.6272585
  19  ENSG00000185985  AluSg -0.040822575 0.948037523 0.9963484
  20  ENSG00000185985 AluSg1  0.848400901 0.069222610 0.3845701
  21  ENSG00000144355    ALU  0.977645104 0.003998814 0.1584895
  22  ENSG00000144355  AluJb -0.750119803 0.144192729 0.5444463
  23  ENSG00000144355  AluJo -0.705557468 0.183086511 0.5541786
  24  ENSG00000144355  AluJr  0.587664575 0.297393621 0.5630971
  25  ENSG00000144355 AluJr4 -0.776587428 0.122427066 0.5444463
  26  ENSG00000144355  AluSc -0.061423523 0.921842347 0.9963484
  27  ENSG00000144355 AluSc5 -0.724608746 0.166131097 0.5444463
  28  ENSG00000144355 AluSc8  0.216121242 0.726983309 0.9320299
  29  ENSG00000144355  AluSg -0.147209810 0.813245835 0.9497359
  30  ENSG00000144355 AluSg1 -0.863923078 0.059012126 0.3845701
  31  ENSG00000234003    ALU  0.489111641 0.403051509 0.6357558
  32  ENSG00000234003  AluJb -0.424128213 0.476640977 0.6907840
  33  ENSG00000234003  AluJo -0.532696266 0.355353971 0.6183901
  34  ENSG00000234003  AluJr  0.007812559 0.990052842 0.9963484
  35  ENSG00000234003 AluJr4 -0.118939023 0.848919946 0.9646818
  36  ENSG00000234003  AluSc -0.301172302 0.622414070 0.8411001
  37  ENSG00000234003 AluSc5 -0.485664738 0.406883684 0.6357558
  38  ENSG00000234003 AluSc8 -0.495383359 0.396100596 0.6357558
  39  ENSG00000234003  AluSg -0.456475130 0.439665174 0.6764080
  40  ENSG00000234003 AluSg1 -0.438446652 0.460193093 0.6868554
  41  ENSG00000257342    ALU -0.850895965 0.067547323 0.3845701
  42  ENSG00000257342  AluJb  0.632946581 0.251731326 0.5630971
  43  ENSG00000257342  AluJo  0.440042521 0.458367680 0.6868554
  44  ENSG00000257342  AluJr -0.720921132 0.169375924 0.5444463
  45  ENSG00000257342 AluJr4  0.872002426 0.053903556 0.3845701
  46  ENSG00000257342  AluSc -0.207289676 0.737973092 0.9341432
  47  ENSG00000257342 AluSc5  0.559761398 0.326490492 0.5936191
  48  ENSG00000257342 AluSc8 -0.655609642 0.229664268 0.5630971
  49  ENSG00000257342  AluSg -0.158883044 0.798558199 0.9497359
  50  ENSG00000257342 AluSg1  0.756680325 0.138700086 0.5444463
  51  ENSG00000223953    ALU -0.717348346 0.172536893 0.5444463
  52  ENSG00000223953  AluJb  0.982104264 0.002866084 0.1584895
  53  ENSG00000223953  AluJo  0.144409738 0.816772895 0.9497359
  54  ENSG00000223953  AluJr -0.767028837 0.130165486 0.5444463
  55  ENSG00000223953 AluJr4  0.691380590 0.196003808 0.5600109
  56  ENSG00000223953  AluSc -0.541488322 0.345911297 0.6176987
  57  ENSG00000223953 AluSc5  0.969944882 0.006226498 0.1584895
  58  ENSG00000223953 AluSc8  0.042097799 0.946415254 0.9963484
  59  ENSG00000223953  AluSg  0.574141073 0.311408899 0.5766831
  60  ENSG00000223953 AluSg1  0.945745298 0.015046089 0.2149441
  61  ENSG00000230317    ALU  0.586647879 0.298441483 0.5630971
  62  ENSG00000230317  AluJb -0.513343522 0.376355104 0.6272585
  63  ENSG00000230317  AluJo -0.185495506 0.765181302 0.9497359
  64  ENSG00000230317  AluJr  0.794722473 0.108143271 0.5407164
  65  ENSG00000230317 AluJr4 -0.815433083 0.092503913 0.4868627
  66  ENSG00000230317  AluSc  0.332684388 0.584361914 0.8004958
  67  ENSG00000230317 AluSc5 -0.409020697 0.494127745 0.7058968
  68  ENSG00000230317 AluSc8  0.677029272 0.209329472 0.5630971
  69  ENSG00000230317  AluSg  0.159520093 0.797757428 0.9497359
  70  ENSG00000230317 AluSg1 -0.601607136 0.283121200 0.5630971
  71  ENSG00000141959    ALU  0.017839037 0.977287837 0.9963484
  72  ENSG00000141959  AluJb -0.276922959 0.651970513 0.8692940
  73  ENSG00000141959  AluJo  0.590270639 0.294712043 0.5630971
  74  ENSG00000141959  AluJr -0.002867958 0.996348407 0.9963484
  75  ENSG00000141959 AluJr4  0.030565284 0.961089132 0.9963484
  76  ENSG00000141959  AluSc  0.892082480 0.041861398 0.3805582
  77  ENSG00000141959 AluSc5 -0.335069114 0.581499822 0.8004958
  78  ENSG00000141959 AluSc8  0.268745736 0.661987041 0.8710356
  79  ENSG00000141959  AluSg  0.004444860 0.994340646 0.9963484
  80  ENSG00000141959 AluSg1 -0.172163762 0.781882046 0.9497359
  81  ENSG00000128908    ALU  0.651837044 0.233299171 0.5630971
  82  ENSG00000128908  AluJb -0.969580963 0.006339580 0.1584895
  83  ENSG00000128908  AluJo -0.054190132 0.931036765 0.9963484
  84  ENSG00000128908  AluJr  0.743122905 0.150119191 0.5444463
  85  ENSG00000128908 AluJr4 -0.640549121 0.244267511 0.5630971
  86  ENSG00000128908  AluSc  0.611227581 0.273381439 0.5630971
  87  ENSG00000128908 AluSc5 -0.963046536 0.008479974 0.1695995
  88  ENSG00000128908 AluSc8 -0.069629553 0.911416589 0.9963484
  89  ENSG00000128908  AluSg -0.599782032 0.284979023 0.5630971
  90  ENSG00000128908 AluSg1 -0.913337548 0.030224055 0.3367715
  91  ENSG00000231856    ALU -0.859377870 0.061949073 0.3845701
  92  ENSG00000231856  AluJb  0.627513737 0.257101967 0.5630971
  93  ENSG00000231856  AluJo  0.425660711 0.474874634 0.6907840
  94  ENSG00000231856  AluJr -0.486076706 0.406425225 0.6357558
  95  ENSG00000231856 AluJr4  0.699669785 0.188420729 0.5541786
  96  ENSG00000231856  AluSc -0.224975626 0.715987202 0.9298535
  97  ENSG00000231856 AluSc5  0.608081008 0.276557133 0.5630971
  98  ENSG00000231856 AluSc8 -0.529625851 0.358666266 0.6183901
  99  ENSG00000231856  AluSg -0.120316489 0.847178697 0.9646818
  100 ENSG00000231856 AluSg1  0.729781788 0.161609930 0.5444463

ferygood/TEKRABber documentation built on July 31, 2024, 6:36 p.m.