NEWS.md

In ferygood/TEKRABber: An R package estimates the correlations of orthologs and transposable elements between two species

Changes in version 1.7.3 (2024-03-28)

• specify biomaRt version 105 in example and test code to avoid spontaneously error from biomaRt package. This help report the issues specific to TEKRABber.

Changes in version 1.7.2 (2024-02-22)

• New function: prepareRMSK() for getting repeatmasker
• New parameter: numCore in corrOrthologTE() for parallel computing

Changes in version 1.7.1 (2024-01-24)

• fix argument issue in citation.

Changes in version 1.7.0 (2024-01-22)

• add bioRxiv citation and fix figure rendering issue.

Changes in version 1.6.0 (2023-10-16)

• modified appTEKRABber function for excluding global variable setting and update UI.

Changes in version 1.4.0 (2023-03-01)

• include hg38_panTro6_rmsk annotation and normalization of TE in orthologScale function.

Changes in version 1.1.1 (2022-05-05)

• set useEnsembl version to 105 becasue BiomaRt 106 issue.

Changes in version 0.99.91 (2022-03-14)

• fix check errors, remove contrastVector from examples and unit-tests

Changes in version 0.99.9 (2022-03-10)

• remove redundant contrastVector parameters in DEgeneTE()

Changes in version 0.99.8 (2022-02-28)

• add ORCID of authors

Changes in version 0.99.7 (2022-02-18)

• add jpg file for building vignettes and depend on R(>=4.2)

Changes in version 0.99.6 (2022-02-15)

• fix corrOrthologTE() example, add instructions assign app-prefix variable for using appTEKRABber()

Changes in version 0.99.5 (2022-02-12)

• remove dplyr dependencies and add orthologScale() test

Changes in version 0.99.4 (2022-02-06)

• modified coding styles (length, indentation) and remove NOTEs

Changes in version 0.99.3 (2022-02-06)

• modified requests from Bioconductor reviews

Changes in version 0.99.2 (2022-01-14)

• Bumps to Version: 0.99.2 and remove inst/doc

Changes in version 0.99.1 (2022-01-14)

• Bump from Version: 0.99.0 to Version: 0.99.1

Changes in version 0.99.0 (2021-12-07)

• Submitted to Bioconductor

ferygood/TEKRABber documentation built on July 31, 2024, 6:36 p.m.