starfusion_example: starfusion_example.tsv

In federicomarini/annoFuseData: Data Package for the annoFuse Bioconductor Package

starfusion_example.tsv

Description

detailed desc One row of the typical output file from STAR-fusion (version TODO)

Format

When read in via read.delim, the following information is available:

• X.FusionName

• JunctionReadCount

• SpanningFragCount

• SpliceType

• LeftGene

• LeftBreakpoint

• RightGene

• RightBreakpoint

• LargeAnchorSupport

• FFPM

• LeftBreakDinuc

• LeftBreakEntropy

• RightBreakDinuc

• RightBreakEntropy

• annots

• CDS_LEFT_ID

• CDS_LEFT_RANGE

• CDS_RIGHT_ID

• CDS_RIGHT_RANGE

• PROT_FUSION_TYPE

• FUSION_MODEL

• FUSION_CDS

• FUSION_TRANSL

• PFAM_LEFT

• PFAM_RIGHT

• tumor_id

References

if any

federicomarini/annoFuseData documentation built on Aug. 3, 2024, 4:48 p.m.