preceded.gene.by.interval: preceded.gene.by.interval
In favorov/differential.coverage: Differential Coverage package
Description
Usage
Arguments
Value
Author(s)
See Also
Description
For each interval, find the closest gene that the interval precede.
An overlapped gene is neglected.
Genes are provided by parameter or they are returned by get.Known.Gene.List for genome_id.
Usage
1
preceded.gene.by.interval(noodles, genes = NA, genome.id = "gencode19")
Arguments
noodles
the GRanges list of intervals to look TSS in
genes
it is GRandes oject with the annotation genes. The gene_name matadata field is almost required, it passes the gene name to form output.
The default is NA that means that the function will call get.Known.Gene.List
genome.id
is genome.annotation.id to call get.Known.Gene.List
Value
GRanges object, noodles argument with added closest preceded (non overlapped) gene info for each interval
Author(s)
Alexander Favorov, favorov@sensi.org
See Also
favorov/differential.coverage documentation built on Feb. 18, 2022, 5:50 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
For each interval, find the closest gene that the interval precede.
An overlapped gene is neglected.
Genes are provided by parameter or they are returned by get.Known.Gene.List for genome_id.
Usage
1 | preceded.gene.by.interval(noodles, genes = NA, genome.id = "gencode19")
|
Arguments
noodles |
the |
genes |
it is GRandes oject with the annotation genes. The gene_name matadata field is almost required, it passes the gene name to form output.
The default is NA that means that the function will call |
genome.id |
is genome.annotation.id to call |
Value
GRanges object, noodles argument with added closest preceded (non overlapped) gene info for each interval
Author(s)
Alexander Favorov, favorov@sensi.org
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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