select_reference_levels_ui: Refernce levels for selected factor

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

Refernce levels for selected factor

Description

This function uses a vector of selected factors to create choices for the reference level to use for the factor in the DEG analysis.

Usage

select_reference_levels_ui(
  sample_info,
  select_factors_model,
  data_file_format,
  counts_deg_method
)

Arguments

sample_info	Experiment file information for grouping
select_factors_model	The selected factors for the model expression
data_file_format	Type of gene data being examined
counts_deg_method	The method or package being used for the DEG analysis

Value

A list the same length as the vector of selected factors. Each entry in the list corresponds to the choice of group to use for the reference level.

espors/idepGolem documentation built on Oct. 27, 2024, 4:56 a.m.