Description Details Methods Author(s)
Base-pair resolution quantitative data.
This class extends EpivizTrackData-class
directly. As such, its object
field is constrained to contain a GIntervalTree
object. Quantitative data for each genomic position is assumed to be stored in the elementMetadata
slot of object
.
.checkColumns(columns)
: Checks argument columns
is a subset of names(mcols(object)).
.getColumns()
: Returns names(mcols(object))
.
plot()
: Calls the lineChart
method of EpivizDeviceMgr-class
with columns
as argument.
getMeasurements()
: Returns named character vector. Entries are of format '<name>$<column>'. Vector names are of format
'<id>__<column>'.
parseMeasurement(msId)
: Parses measurement of format '<id>__<column>'.
packageData(msId)
: Get data for msId
for rows overlapping curQuery
. Returns a list with components: min
: min value for data range, max
: max value for data range, data
: list with slots: bp
: genomic location,
value
: numeric data value.
Hector Corrada Bravo
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