R/cragr-package.R

In epifluidlab/cragr: R package for CRAG

#' @import here
#' @import dplyr
#' @import purrr
#' @import stringr
#' @importFrom magrittr `%<>%`
#' @importFrom assertthat assert_that
#' @importFrom rlang is_null is_true
#' @importFrom data.table setnames setkey fread fwrite shift setDT data.table 
#' rbindlist as.data.table
#' @importFrom GenomicRanges makeGRangesFromDataFrame findOverlaps countOverlaps 
#' mcols `mcols<-`
#' @importFrom GenomicRanges pintersect ranges `ranges<-` width `width<-` 
#' start `start<-` end `end<-` strand `strand<-`
#' @importFrom GenomeInfoDb seqnames `seqnames<-` seqlengths keepSeqlevels 
#' seqinfo `seqinfo<-` seqlevels `seqlevels<-`
#' @importFrom S4Vectors from to queryHits subjectHits
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## usethis namespace: start
#' @useDynLib cragr, .registration = TRUE
## usethis namespace: end
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## usethis namespace: start
#' @importFrom Rcpp sourceCpp
## usethis namespace: end
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