Files in eolagbaju/ODER
Optimising the Definition of Expressed Regions
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/ODER-package.R
R/ODER.R
R/annotatER.R
R/data.R
R/get-coverage.R
R/get-ers.R
R/get_count_matrix.R
R/get_expressed_genes.R
R/globals.R
R/optimise-ERs.R
R/plot-ERs.R
R/refine-ERs.R
R/rutils.R
R/utils-pipe.R
README.Rmd
README.md
codecov.yml
data-raw/example.R
data-raw/exon_biotypes.R
data-raw/tissues.R
data/gtex_SRP012682_SRX222703_lung_auc_1.rda
data/gtex_SRP012682_SRX222703_lung_coverage_1.rda
data/gtex_SRP012682_SRX222703_lung_erdelta_1.rda
data/gtex_SRP012682_SRX222703_lung_ers_1.rda
data/lung_junc_21_22.rda
data/pseudogene.rda
data/tissue_options.rda
inst/CITATION
man/ODER.Rd
man/add_expressed_genes.Rd
man/annotatERs.Rd
man/figures/README-plot_example-1.png
man/file_cache.Rd
man/get_chr_info.Rd
man/get_count_matrix.Rd
man/get_coverage.Rd
man/get_ers.Rd
man/get_opt_ers.Rd
man/gtex_SRP012682_SRX222703_lung_auc_1.Rd
man/gtex_SRP012682_SRX222703_lung_coverage_1.Rd
man/gtex_SRP012682_SRX222703_lung_erdelta_1.Rd
man/gtex_SRP012682_SRX222703_lung_ers_1.Rd
man/lung_junc_21_22.Rd
man/plot_ers.Rd
man/pseudogene.Rd
man/refine_ERs.Rd
man/tissue_options.Rd
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test-ODER.R
tests/testthat/test-add_expressed_genes.R
tests/testthat/test-annotatERs.R
tests/testthat/test-get_count_matrix.R
tests/testthat/test-get_coverage.R
tests/testthat/test-optimise_ERs.R
tests/testthat/test-plot_ers.R
tests/testthat/test-r_utils.R
tests/testthat/test-refineERs.R
vignettes/.gitignore
vignettes/ODER_overview.Rmd
