Files in drighelli/VisiumExperiment
S4 Class for Spatially Resolved -omics Data
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/SpatialExperiment-assays.R
R/SpatialExperiment-colData.R
R/SpatialExperiment-combine.R
R/SpatialExperiment-methods.R
R/SpatialExperiment-rotate-mirror.R
R/SpatialExperiment.R
R/SpatialImage-utils.R
R/SpatialImage.R
R/Validity.R
R/coerce.R
R/imgData-methods.R
R/imgData-utils.R
R/imgData.R
R/read10xVisium.R
R/readImgData.R
R/show.R
R/subset.R
README.md
inst/CITATION
inst/NEWS
inst/extdata/10xVisium/section1/outs/raw_feature_bc_matrix/barcodes.tsv
inst/extdata/10xVisium/section1/outs/raw_feature_bc_matrix/features.tsv
inst/extdata/10xVisium/section1/outs/raw_feature_bc_matrix/matrix.mtx
inst/extdata/10xVisium/section1/outs/spatial/scalefactors_json.json
inst/extdata/10xVisium/section1/outs/spatial/tissue_lowres_image.png
inst/extdata/10xVisium/section1/outs/spatial/tissue_positions_list.csv
inst/extdata/10xVisium/section2/outs/raw_feature_bc_matrix/barcodes.tsv
inst/extdata/10xVisium/section2/outs/raw_feature_bc_matrix/features.tsv
inst/extdata/10xVisium/section2/outs/raw_feature_bc_matrix/matrix.mtx
inst/extdata/10xVisium/section2/outs/spatial/scalefactors_json.json
inst/extdata/10xVisium/section2/outs/spatial/tissue_lowres_image.png
inst/extdata/10xVisium/section2/outs/spatial/tissue_positions_list.csv
inst/extdata/README
man/SpatialExperiment-assays.Rd
man/SpatialExperiment-coercion.Rd
man/SpatialExperiment-colData.Rd
man/SpatialExperiment-combine.Rd
man/SpatialExperiment-methods.Rd
man/SpatialExperiment-misc.Rd
man/SpatialExperiment-rotate-mirror.Rd
man/SpatialExperiment-subset.Rd
man/SpatialExperiment.Rd
man/SpatialImage-class.Rd
man/SpatialImage-misc.Rd
man/imgData-methods.Rd
man/read10xVisium.Rd
man/readImgData.Rd
tests/testthat.R
tests/testthat/test_SpatialExperiment-assays.R
tests/testthat/test_SpatialExperiment-cbind.R
tests/testthat/test_SpatialExperiment-coercion.R
tests/testthat/test_SpatialExperiment-colData.R
tests/testthat/test_SpatialExperiment-methods.R
tests/testthat/test_SpatialExperiment-rotate-mirror.R
tests/testthat/test_SpatialExperiment-subset.R
tests/testthat/test_SpatialExperiment-validity.R
tests/testthat/test_SpatialExperiment.R
tests/testthat/test_SpatialImage-methods.R
tests/testthat/test_SpatialImage.R
tests/testthat/test_imgData-methods.R
tests/testthat/test_read10xVisium.R
vignettes/SPE.png
vignettes/SpatialExperiment.Rmd
