propagateGO: Propagate Gene Ontology annotation.

In dmontaner/mdgsa: Multi Dimensional Gene Set Analysis.

Description

Genes annotated under a GO term inherit the annotation from all its ancestors.

Usage

propagateGO(annot, verbose = FALSE)

Arguments

annot	annotation list or matrix.
verbose	verbose

Details

Uses the library GO.db.

Value

A annotation matrix or list with the propagated annotation.

Author(s)

David Montaner [e-mail]

See Also

annotMat2list, annotFilter

Examples

mat <- cbind (c("gene1", "gene2"), c("GO:0034390", "GO:0042889"))
mat
propagateGO (mat)

li <- list ('GO:0034390' = "gene1", 'GO:0042889' = "gene2")
li
propagateGO (li)

dmontaner/mdgsa documentation built on May 15, 2019, 9:35 a.m.