mm9-Genes: mm9-Genes

In dhelekal/mmdiff3: Statistical Testing for ChIP-Seq data sets

Description

Subset of Genes from the mm9 annotation that overlap with example Peaks in the Cfp1-Peaks file.

Usage

data('mm9-Genes')

Format

contains, GR a GRanges object with 800 ranges

Examples

# data was created as follows:
## Not run: 
data('Cfp1-Peaks')
library(TxDb.Mmusculus.UCSC.mm9.knownGene)
txdb <- TxDb.Mmusculus.UCSC.mm9.knownGene #shorthand (for convenience) txdb
GR <- transcripts(txdb)
ov <- findOverlaps(GR,Peaks)
GR <- GR[queryHits(ov)]
save(file = 'data/mm9-Genes.rData',GR)

## End(Not run)

dhelekal/mmdiff3 documentation built on July 25, 2019, 8:18 p.m.