matchRegExp.BSgenome: Customised matching for regular expression binding factors to...
In davetgerrard/GenomicLayers: Simple, sequence-based simulation of epi-genomes.
View source: R/matchRegExp.BSgenome.R
matchRegExp.BSgenome R Documentation
Customised matching for regular expression binding factors to BSgenomes
Description
Generate a list of matches for a binding factor against a BSgenome object.
With proper forward and reverse patterns, will return hits from both strands.
Usage
matchRegExp.BSgenome(genome, forRegExp, revRegExp)
Arguments
genome
a "BSgenome" object
forRegExp
see createBindingFactor.DNA_regexp
revRegExp
see createBindingFactor.DNA_regexp
Value
"Hits"
See Also
createBindingFactor.DNA_regexp
davetgerrard/GenomicLayers documentation built on Jan. 12, 2025, 5:06 p.m.
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View source: R/matchRegExp.BSgenome.R
| matchRegExp.BSgenome | R Documentation |
Customised matching for regular expression binding factors to BSgenomes
Description
Generate a list of matches for a binding factor against a BSgenome object. With proper forward and reverse patterns, will return hits from both strands.
Usage
matchRegExp.BSgenome(genome, forRegExp, revRegExp)
Arguments
genome |
a |
forRegExp |
see |
revRegExp |
see |
Value
"Hits"
See Also
createBindingFactor.DNA_regexp
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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