reparseCachedESs: Reparse cached expression sets from GEO.
In ctlab/phantasus: Visual and interactive gene expression analysis
reparseCachedESs R Documentation
Reparse cached expression sets from GEO.
Description
The function should be used on phantasus version updates that change
behavior of loading datasets from GEO. It finds all the datasets
that were cached and runs 'getES' for them again. The function
uses cached Series and other files from GEO.
Usage
reparseCachedESs(destdir, mirrorPath = getPhantasusConf("geo_mirrors"))
Arguments
destdir
Directory used for caching loaded Series files from GEO database.
mirrorPath
URL string which specifies the source of matrices.
Value
vector of previously cached GSE IDs
Examples
reparseCachedESs(destdir=tempdir(), "https://ftp.ncbi.nlm.nih.gov")
ctlab/phantasus documentation built on Oct. 11, 2024, 4:11 p.m.
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| reparseCachedESs | R Documentation |
Reparse cached expression sets from GEO.
Description
The function should be used on phantasus version updates that change behavior of loading datasets from GEO. It finds all the datasets that were cached and runs 'getES' for them again. The function uses cached Series and other files from GEO.
Usage
reparseCachedESs(destdir, mirrorPath = getPhantasusConf("geo_mirrors"))
Arguments
destdir |
Directory used for caching loaded Series files from GEO database. |
mirrorPath |
URL string which specifies the source of matrices. |
Value
vector of previously cached GSE IDs
Examples
reparseCachedESs(destdir=tempdir(), "https://ftp.ncbi.nlm.nih.gov")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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