calculateDispersionsddsList: Calculate dispersions
In csoneson/countsimQC: Compare Characteristic Features of Count Data Sets
View source: R/calculateDispersionsddsList.R
calculateDispersionsddsList R Documentation
Calculate dispersions
Description
Calculate the dispersions for each data set in a list of DESeqDataSets, using
both edgeR and DESeq2.
Usage
calculateDispersionsddsList(ddsList, maxNForDisp)
Arguments
ddsList
A list of DESeqDataSets
maxNForDisp
If any data set contains more than maxNForDisp
samples, maxNForDisp of them will be randomly sampled before the
dispersions are calculated, in order to speed up calculations
Value
A list of the same length as the input list. Each element in the list
is itself a list, containing a DGEList and a DESeqDataSet with calculated
dispersions.
Author(s)
Charlotte Soneson
csoneson/countsimQC documentation built on Nov. 7, 2024, 3:15 a.m.
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View source: R/calculateDispersionsddsList.R
| calculateDispersionsddsList | R Documentation |
Calculate dispersions
Description
Calculate the dispersions for each data set in a list of DESeqDataSets, using both edgeR and DESeq2.
Usage
calculateDispersionsddsList(ddsList, maxNForDisp)
Arguments
ddsList |
A list of DESeqDataSets |
maxNForDisp |
If any data set contains more than |
Value
A list of the same length as the input list. Each element in the list is itself a list, containing a DGEList and a DESeqDataSet with calculated dispersions.
Author(s)
Charlotte Soneson
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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