mergeAnnotations: Merge DE, BLAST, KEGG Info and filter
In croesel/Trans2Kegg: Annotate transcripts and predicted protein sequences
Description
Usage
Arguments
Value
Examples
Description
Merge DE, BLAST, KEGG Info and filter
Usage
1
mergeAnnotations(dfAll, annotFile, cov = 0.5, e_val = 1e-10)
Arguments
dfAll
csv output file from annotateDE
annotFile
csv output file from annotateTranscripts
cov
Query coverage cutoff
e_val
e-value cutoff
Value
Annotation results are written to cvCnt.csv.
Examples
1
2
3
4
5
annot <- system.file("extdata", "annot.csv",
package="Trans2Kegg")
dfAll <- system.file("extdata", "dfAll.csv",
package="Trans2Kegg")
mergeAnnotations(dfAll, annot)
croesel/Trans2Kegg documentation built on May 12, 2019, 3:11 p.m.
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Description Usage Arguments Value Examples
Description
Merge DE, BLAST, KEGG Info and filter
Usage
1 | mergeAnnotations(dfAll, annotFile, cov = 0.5, e_val = 1e-10)
|
Arguments
dfAll |
csv output file from annotateDE |
annotFile |
csv output file from annotateTranscripts |
cov |
Query coverage cutoff |
e_val |
e-value cutoff |
Value
Annotation results are written to cvCnt.csv.
Examples
1 2 3 4 5 | annot <- system.file("extdata", "annot.csv",
package="Trans2Kegg")
dfAll <- system.file("extdata", "dfAll.csv",
package="Trans2Kegg")
mergeAnnotations(dfAll, annot)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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