df_for_coords: Construct a data frame of coordinate info from coordinate...
In cole-trapnell-lab/cicero: Predict cis-co-accessibility from single-cell chromatin accessibility data
df_for_coords R Documentation
Construct a data frame of coordinate info from coordinate strings
Description
Construct a data frame of coordinate info from coordinate strings
Usage
df_for_coords(coord_strings)
Arguments
coord_strings
A list of coordinate strings (each like
"chr1:500000-1000000")
Details
Coordinate strings consist of three pieces of information:
chromosome, start, and stop. These pieces of information can be separated
by the characters ":", "_", or "-". Commas will be removed, not used as
separators (ex: "chr18:8,575,097-8,839,855" is ok).
Value
data.frame with three columns, chromosome, starting base pair and
ending base pair
Examples
df_for_coords(c("chr1:2,039-30,239", "chrX:28884:101293"))
cole-trapnell-lab/cicero documentation built on March 13, 2023, 6:02 p.m.
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| df_for_coords | R Documentation |
Construct a data frame of coordinate info from coordinate strings
Description
Construct a data frame of coordinate info from coordinate strings
Usage
df_for_coords(coord_strings)
Arguments
coord_strings |
A list of coordinate strings (each like "chr1:500000-1000000") |
Details
Coordinate strings consist of three pieces of information: chromosome, start, and stop. These pieces of information can be separated by the characters ":", "_", or "-". Commas will be removed, not used as separators (ex: "chr18:8,575,097-8,839,855" is ok).
Value
data.frame with three columns, chromosome, starting base pair and ending base pair
Examples
df_for_coords(c("chr1:2,039-30,239", "chrX:28884:101293"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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