Man pages for chandlerzuo/cssp
ChIP-Seq Statistical Power
| bin.data | An artificially constructed BinData-class class object. |
| bindata.chr1 | An artificially constructed data.frame object that can be... |
| BinData-class | An S-4 class containing the model fit information for a CSSP... |
| bindcount | Compute the number of reads overlapping the specified... |
| bindcount.chr | Compute the number of reads overlapping the specified... |
| bindpos | An artificially constructed dataset containing enrichment... |
| callpeak-methods | Call enriched bins based on the CSSP model. |
| createBinData | Create a BinData object by merging lists of ChIP and input... |
| CSSPFit-class | An S-4 class containing the model fit information for CSSP... |
| cssp.fit-methods | Fit the CSSP Model. |
| cssp.power-methods | Compute the weighted average of bin-wise power conditioning... |
| cssp.sim-methods | Simulate bin binding intensities according to the posterior... |
| fit.freq-methods | Compute the estimated frequency for ChIP counts based on the... |
| pBBT-methods | Compute the cumulative probability of the bin-level poisson... |
| peakcount | Compute the number of aligned reads overlapping the specified... |
| peakcount.chr | Compute the number of aligned reads overlapping peaks for one... |
| peakpos | An artificially generated dataset containing peak invervals... |
| qBBT-methods | Compute the quantile estimate for the bin-level poisson... |
| readBinFile | Read the bin-level text files containing ChIP and input... |
| sampleFit | A "CSSPFit" class object containing the fitted CSSP model for... |
| tag2bin | Convert the genome coordinates of aligned reads to bin-level... |
| tag2bin.chr | Convert the genome coordinates of aligned reads to bin-level... |
| tagdat_chip | An artificially constructed dataset containing genome... |
| tagdat_input | An artificially constructed dataset containing genome... |
