trans_mat: Default transition probability matrix for nucleotide...
In chandlerzuo/atIndel: Affinity test for identifying regularity Indels
trans_mat R Documentation
Default transition probability matrix for nucleotide sequences in the
reference genome.
Description
This parameter is fitted using randomly selected 100K 100bp
sequences from hg19, excluding the first and last 10k base pairs of each
chromosome, according to a 1st-order Markov model.
Format
A 4 by 4 numeric matrix.
Author(s)
Qinyi Zhou qinyi.zhou@utdallas.edu,
Chandler Zuo chandler.c.zuo@gmail.com,
Sunyoung Shin sunyoung.shin@utdallas.edu
chandlerzuo/atIndel documentation built on Jan. 20, 2024, 4:10 a.m.
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| trans_mat | R Documentation |
Default transition probability matrix for nucleotide sequences in the reference genome.
Description
This parameter is fitted using randomly selected 100K 100bp sequences from hg19, excluding the first and last 10k base pairs of each chromosome, according to a 1st-order Markov model.
Format
A 4 by 4 numeric matrix.
Author(s)
Qinyi Zhou qinyi.zhou@utdallas.edu, Chandler Zuo chandler.c.zuo@gmail.com, Sunyoung Shin sunyoung.shin@utdallas.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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