mbrGet-methods: Get information from individual slots in MBR object.

In chagasVinicius/RTNduals-alpha: analysis of co-regulatory network motifs and inference of 'dual regulons'.

Description

Get information from individual slots in an MBR object and any available results from previous analysis.

Usage

## S4 method for signature 'MBR'
mbrGet(object, what = "status")

Arguments

object	A preprocessed object of class MBR
what	a single character value specifying which information should be retrieved from the slots. Options: "TNI1", "TNI2", "testedElementsTNI1", "testedElementsTNI2", "dualRegulons", "results", "para", "summary", "status", "motifsInformation" and "hyperResults"

Value

A slot content from a object of class 'MBR' MBR object

Examples

data("dt4rtn", package = "RTN")
gexp <- dt4rtn$gexp
annot <- dt4rtn$gexpIDs
tfs1 <- dt4rtn$tfs[c("IRF8","IRF1","PRDM1","AFF3","E2F3")]
tfs2 <- dt4rtn$tfs[c("HCLS1","STAT4","STAT1","LMO4","ZNF552")]
##---mbrPreprocess
rmbr <- mbrPreprocess(gexp=gexp, regulatoryElements1 = tfs1, 
regulatoryElements2=tfs2, gexpIDs=annot)
##---get the 'TNI1' slot using 'mbrGet'
tni1 <- mbrGet(rmbr, what="TNI1")

chagasVinicius/RTNduals-alpha documentation built on May 13, 2019, 3:10 p.m.