extract_PAM50: Extract PAM50 genes
In ccchang0111/PAM50: Breast Cancer's PAM50 prediction based on patient's RNA-seq data
Description
Usage
Arguments
Value
Description
Extract PAM50 genes
Usage
1
extract_PAM50(df, an = NULL)
Arguments
df
expression dataframe, rownames has to be EntrezID (Gene ID)
an
annotation dataframe. Optional, if passed in, those 50 gene info will be extracted.
Value
es.50 dataframe with extracted PAM50 gene symbols as rownames
an.50 (optional) if an is passed in, it will return an.50 dataframe that contains extracted PAM50 gene info
ccchang0111/PAM50 documentation built on May 31, 2019, 5:40 a.m.
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Description Usage Arguments Value
Description
Extract PAM50 genes
Usage
1 | extract_PAM50(df, an = NULL)
|
Arguments
df |
expression dataframe, rownames has to be EntrezID (Gene ID) |
an |
annotation dataframe. Optional, if passed in, those 50 gene info will be extracted. |
Value
es.50 dataframe with extracted PAM50 gene symbols as rownames
an.50 (optional) if an is passed in, it will return an.50 dataframe that contains extracted PAM50 gene info
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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