pathway_similarities: Collection of pathway similarity matrices.
In cbg-ethz/pareg: Pathway enrichment using a regularized regression approach
pathway_similarities R Documentation
Collection of pathway similarity matrices.
Description
Contains matrices for various pathway databases and similarity measures.
Note that the matrices are sparse, upper triangular and subsampled to
a maximum size of $1000x1000$ if necessary.
They can be transformed to a dense representation
using pareg::as_dense_sim.
Usage
pathway_similarities
Format
A list of lists of matrices.
* Pathway database 1
* Similarity measure 1
* Similarity measure 2
* ...
* Pathway database 2
* ...
cbg-ethz/pareg documentation built on July 20, 2023, 7:30 p.m.
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| pathway_similarities | R Documentation |
Collection of pathway similarity matrices.
Description
Contains matrices for various pathway databases and similarity measures.
Note that the matrices are sparse, upper triangular and subsampled to
a maximum size of $1000x1000$ if necessary.
They can be transformed to a dense representation
using pareg::as_dense_sim.
Usage
pathway_similarities
Format
A list of lists of matrices. * Pathway database 1 * Similarity measure 1 * Similarity measure 2 * ... * Pathway database 2 * ...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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