Files in cbg-ethz/knockdown

Statistical Analysis of High-Throughput Genetic Perturbation Screens

NEWS.md R/class_analysed.R R/class_data.R R/data.R R/inference_diffuse.R R/inference_diffuse_mrw.R R/inference_lmm.R R/inference_lmm_fdr.R R/inference_lmm_locfdr.R R/inference_lmm_model_data.R R/methods_combine.R R/methods_filter.R R/methods_getters.R R/methods_show.R R/perturbatr-package.R R/plot_data.R R/plot_diffusion.R R/plot_hm.R R/util_as.R R/util_effect_matrix.R R/util_enums.R R/util_functions.R R/util_graph.R R/util_sampler.R README.md code-of-conduct.md inst/figure/sticker.R man/HMAnalysedPerturbationData-class.Rd man/NetworkAnalysedPerturbationData-class.Rd man/PerturbationData-class.Rd man/bootstrap.Rd man/dataSet-methods.Rd man/diffuse-methods.Rd man/filter-methods.Rd man/geneEffects-methods.Rd man/graph-methods.Rd man/hm-methods.Rd man/inference-methods.Rd man/isBootstrapped-methods.Rd man/modelFit-methods.Rd man/nestedGeneEffects-methods.Rd man/params-methods.Rd man/perturbatr-package.Rd man/plot.NetworkAnalysedPerturbationData.Rd man/plot.PerturbationData.Rd man/rbind.PerturbationData.Rd man/rnaiscreen.Rd man/setModelData-methods.Rd tests/testthat.R tests/testthat/test_classes.R tests/testthat/test_diffusion.R tests/testthat/test_hm.R tests/testthat/test_methods.R tests/testthat/test_util.R vignettes/perturbatr.Rmd