inst/scripts/gtex_validation/workflow/scripts/explore_data.R
In cbg-ethz/dce: Pathway Enrichment Based on Differential Causal Effects
###
# Plot pathway under consideration.
###
library(tidyverse)
library(cowplot)
devtools::load_all("../../..")
View(dce::df_pathway_statistics %>%
arrange(desc(node_num)))
pathways <- get_pathways(pathway_list = list(kegg = c("Pathways in cancer")))
pathway <- pathways[[1]]$graph
plot_network(as(pathway, 'matrix'), visualize_edge_weights = FALSE)
cbg-ethz/dce documentation built on Oct. 29, 2022, 8:14 a.m.
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###
# Plot pathway under consideration.
###
library(tidyverse)
library(cowplot)
devtools::load_all("../../..")
View(dce::df_pathway_statistics %>%
arrange(desc(node_num)))
pathways <- get_pathways(pathway_list = list(kegg = c("Pathways in cancer")))
pathway <- pathways[[1]]$graph
plot_network(as(pathway, 'matrix'), visualize_edge_weights = FALSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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