SubsetData: SubsetData

In carter-allen/IRISFGM: Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq

Description

This function is used for filtering out low-quality data based on previous result generated from PlotMeta

Usage

SubsetData(object, ...)

.subset_data(
  object,
  nFeature.upper = Inf,
  nFeature.lower = -Inf,
  Counts.upper = Inf,
  Counts.lower = -Inf
)

## S4 method for signature 'IRISFGM'
SubsetData(
  object,
  nFeature.upper = Inf,
  nFeature.lower = -Inf,
  Counts.upper = Inf,
  Counts.lower = -Inf
)

Arguments

object	input IRIS-FGM object
...	other arguments passed to methods
nFeature.upper	select upper limit for number of feature
nFeature.lower	select lower limit for number of feature
Counts.upper	select upper limit for number of UMI counts
Counts.lower	select lower limit for number of UMI counts

Value

it will filter out some cell regarding threshhold.

Examples

# Use Yan's data which posts on github tutorial
## Not run:  
object <- SubsetData(object, 
    nFeature.upper=15000,
    nFeature.lower=8000, 
    Counts.upper=700000,
    Counts.lower=400000)
## End(Not run)

carter-allen/IRISFGM documentation built on Dec. 31, 2020, 9:54 p.m.