plot_sample_reconstruction_error: Plot reconstruction error for a sample

In campbio/musicatk: Mutational Signature Comprehensive Analysis Toolkit

Plot reconstruction error for a sample

Description

Displays the observed distribution of counts for each mutation type, the distribution of reconstructed counts for each mutation type using the inferred mutational signatures, and the difference between the two distributions.

Usage

plot_sample_reconstruction_error(
  musica,
  sample,
  model_id,
  modality = "SBS96",
  result_name = "result",
  plotly = FALSE
)

Arguments

musica	A musica object.
sample	Name of the sample within the musica object.
model_id	The name of the desired model.
modality	The modality of the model. Must be "SBS96", "DBS78", or "IND83". Default "SBS96".
result_name	Name of the result list entry containing desired model. Default "result".
plotly	If TRUE, the the plot will be made interactive using plotly. Default FALSE.

Value

Generates a ggplot or plotly object

Examples

data(res)
plot_sample_reconstruction_error(res, "TCGA-ER-A197-06A-32D-A197-08",
model_id = "res")

campbio/musicatk documentation built on Dec. 25, 2024, 9:34 p.m.