extract_variants_from_maf_file: Extracts variants from a maf file
In campbio/musicatk: Mutational Signature Comprehensive Analysis Toolkit
extract_variants_from_maf_file R Documentation
Extracts variants from a maf file
Description
Add Description - Aaron
Usage
extract_variants_from_maf_file(maf_file, extra_fields = NULL)
Arguments
maf_file
Location of maf file
extra_fields
Optionally extract additional columns from the
object. Default NULL.
Value
Returns a data.table of variants from a maf
Examples
maf_file <- system.file("extdata", "public_TCGA.LUSC.maf",
package = "musicatk"
)
maf <- extract_variants_from_maf_file(maf_file = maf_file)
campbio/musicatk documentation built on Dec. 25, 2024, 9:34 p.m.
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| extract_variants_from_maf_file | R Documentation |
Extracts variants from a maf file
Description
Add Description - Aaron
Usage
extract_variants_from_maf_file(maf_file, extra_fields = NULL)
Arguments
maf_file |
Location of maf file |
extra_fields |
Optionally extract additional columns from the
object. Default |
Value
Returns a data.table of variants from a maf
Examples
maf_file <- system.file("extdata", "public_TCGA.LUSC.maf",
package = "musicatk"
)
maf <- extract_variants_from_maf_file(maf_file = maf_file)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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