tcga_colon_expression: Example exon-level RNAseq data from TCGA project for epivizr...
In briangottfried/epivizrChart: R interface to epiviz web components
Description
Usage
Format
Source
Description
A SummarizedExperiment::RangedSummarizedExperiment object containing exon-level
counts from RNAseq data for colon tumor and normal tissue from the TCGA project.
Only exons in human chromosome 11 are included.
Usage
1
Format
A SummarizedExperiment::RangedSummarizedExperiment object with 12,800 rows (exons) and 40 samples.
assay(tcga_colon_expression)exon-level count matrix
colData(tcga_colon_expression)a DataFrame containing sample information.
Normal/Tumor status is given in column sample_type
Source
TCGA project: https://tcga-data.nci.nih.gov/tcga/
briangottfried/epivizrChart documentation built on Aug. 2, 2021, 3:13 a.m.
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Description Usage Format Source
Description
A SummarizedExperiment::RangedSummarizedExperiment object containing exon-level
counts from RNAseq data for colon tumor and normal tissue from the TCGA project.
Only exons in human chromosome 11 are included.
Usage
1 |
Format
A SummarizedExperiment::RangedSummarizedExperiment object with 12,800 rows (exons) and 40 samples.
assay(tcga_colon_expression)exon-level count matrix
colData(tcga_colon_expression)a
DataFramecontaining sample information. Normal/Tumor status is given in columnsample_type
Source
TCGA project: https://tcga-data.nci.nih.gov/tcga/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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