runMOFA: train a MOFA model

In bioFAM/MOFA: Multi-Omics Factor Analysis (MOFA)

Description

Function to train an untrained MOFAmodel object.

Usage

runMOFA(object, outfile = NULL)

Arguments

object	an untrained MOFAmodel object
outfile	output .hdf5 file

Details

In this step the R package is calling the mofapy Python package, where the the training is performed.
The interface with Python is done with the reticulate package. If you have several versions of Python installed and Rstudio is not detecting the correct one, you can change it using reticulate::use_python.

Value

a trained MOFAmodel object

Examples

data <- makeExampleData()
# create and prepare the MOFAmodel
MOFAobject <- createMOFAobject(data)
MOFAobject <- prepareMOFA(MOFAobject)
# fit the model (takes some time)
## Not run: 
# MOFAobject <- runMOFA(MOFAobject)
# MOFAobject

## End(Not run)

bioFAM/MOFA documentation built on Oct. 3, 2020, 12:53 a.m.