log2tpm: Get/Set log2tpm

In bhagwataditya/importomics: Unified statistal Modeling of Omics Data

Get/Set log2tpm

Description

Get / Set log2tpm matrix

Usage

log2tpm(object)

## S4 method for signature 'SummarizedExperiment'
log2tpm(object)

log2tpm(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,matrix'
log2tpm(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,numeric'
log2tpm(object) <- value

Arguments

object	SummarizedExperiment
value	log2tpm matrix (features x samples)

Value

log2tpm matrix (get) or updated object (set)

Examples

file <- system.file('extdata/billing19.rnacounts.txt', package = 'autonomics')
object <- read_rnaseq_counts(file)
log2tpm(object) <- values(object)
log2tpm(object)[1:3, 1:3]

bhagwataditya/importomics documentation built on Oct. 29, 2024, 3:19 p.m.