coefs: Get coefs

In bhagwataditya/importomics: Unified statistal Modeling of Omics Data

Get coefs

Description

Get coefs

Usage

coefs(object, ...)

## S3 method for class 'factor'
coefs(object, ...)

## S3 method for class 'data.table'
coefs(object, fit = fits(object), svars = NULL, ...)

## S3 method for class 'SummarizedExperiment'
coefs(object, fit = fits(object), ...)

Arguments

object	factor, data.table, SummarizedExperiment
...	required for s3 dispatch
fit	'limma', 'lm', 'lme', 'lmer', 'wilcoxon'
svars	NULL or charactervector (svar for which to return coefs)

Value

character vector

Examples

# Factor
    x <- factor(c('A', 'B', 'C'))
    coefs(x)
    coefs(code(x, contr.treatment.explicit))
    coefs(code(x, code_control))
    
# SummarizedExperiment
    file <- system.file('extdata/atkin.metabolon.xlsx', package = 'autonomics')
    object <- read_metabolon(file, fit = 'limma')
    coefs(object)

bhagwataditya/importomics documentation built on Oct. 29, 2024, 3:19 p.m.