getCopyNumberColors: getCopyNumberColors

In bernatgel/CopyNumberPlots: Create Copy-Number Plots using karyoploteR functionality

getCopyNumberColors

Description

Get the colors representing the copy number levels

Usage

getCopyNumberColors(colors=NULL)

Arguments

colors

(character) Either a palette name (i.e. "green_orange_red") or a vector of colors. If NULL the default palette ("green_orange_red") will be returned. (defaults to NULL)

Details

This function returns a vector of colors with names from 0 to the length of the vector. The colors will be used to represent copy numbers from 0 (homozygous deletion) to the copy number equal to the length of the vector (typically 7 or 8). The function has a single parameter 'colors', which can be either the name of one of the available palettes or the a vector of valid color specifications (i.e. c("red", "#FFAAAA", "gray", "#AAAAFF", "#5555FF", "#0000FF")). If 'colors' is a palette name, the palette will be returned. If color is a color vector, it will be returned with the names set as needed.

Available palettes are: "gree_orange_red" and "red_blue"

Value

A vector of colors with the names set to the positions in the vector.

Examples

getCopyNumberColors()

getCopyNumberColors("red_blue")

getCopyNumberColors(c("red", "#FFAAAA", "gray", "#AAAAFF", "#5555FF", "#0000FF"))

bernatgel/CopyNumberPlots documentation built on Sept. 22, 2023, 1:53 a.m.