setVarsCandidate: mutationCalls cluster setter

In benstory/mitoClone2: Clonal Population Identification in Single-Cell RNA-Seq Data using Mitochondrial and Somatic Mutations

mutationCalls cluster setter

Description

Sets the putative variants that we want to use for clustering

Usage

setVarsCandidate(mutcall, varlist)

Arguments

mutcall	object of class mutationCalls.
varlist	vector of booleans with the names set to the variants to use for clustering

Value

Sets the cluster slot on a mutationCalls object

Examples

load(system.file("extdata/LudwigFig7.Rda",package =
"mitoClone2"))
mutations_to_cluster <- getVarsCandidate(LudwigFig7)
mutations_to_cluster[] <- rep(c(TRUE,FALSE),each=19)
LudwigFig7 <- setVarsCandidate(LudwigFig7,mutations_to_cluster)

benstory/mitoClone2 documentation built on Oct. 30, 2024, 3:20 p.m.