justSNPRMA: Summarization of SNP data

In benilton/oligo-release: Preprocessing tools for oligonucleotide arrays.

Description

This function implements the SNPRMA method for summarization of SNP data. It works directly with the CEL files, saving memory.

Usage

justSNPRMA(filenames, verbose = TRUE, phenoData = NULL, normalizeToHapmap = TRUE)

Arguments

filenames	character vector with the filenames.
verbose	logical flag for verbosity.
phenoData	a phenoData object or NULL
normalizeToHapmap	Normalize to Hapmap? Should always be TRUE, but it's kept here for future use.

Value

SnpQSet or a SnpCnvQSet, depending on the array type.

Examples

## snprmaResults <- justSNPRMA(list.celfiles())

benilton/oligo-release documentation built on May 12, 2019, 10:59 a.m.