Files in athchen/beer
Bayesian Enrichment Estimation in R
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS
R/beadsRR.R
R/beer-package.R
R/brew.R
R/edgeR.R
R/getAB.R
R/guessEnriched.R
R/guessInits.R
R/plotHelpers.R
R/summarizeRun.R
R/utils.R
README.Rmd
README.md
codecov.yml
inst/CITATION
inst/extdata/phipseq_model.bugs
inst/extdata/sim_data.rds
inst/script/phipseq_model.R
inst/script/sim_data.R
man/beadsRR.Rd
man/beer-package.Rd
man/brew.Rd
man/brewOne.Rd
man/dot-beadsRRBeer.Rd
man/dot-beadsRREdgeR.Rd
man/dot-brewSamples.Rd
man/dot-checkCounts.Rd
man/dot-checkOverwrite.Rd
man/dot-edgeRBeads.Rd
man/dot-edgeRBeadsQLF.Rd
man/dot-getABEdgeR.Rd
man/dot-getABMLE.Rd
man/dot-getABMLEProp.Rd
man/dot-getABMOM.Rd
man/dot-getABMOMProp.Rd
man/dot-guessEnrichedEdgeR.Rd
man/dot-guessEnrichedMLE.Rd
man/dot-tidyAssayNames.Rd
man/dot-tidyInputsJAGS.Rd
man/dot-tidyInputsPrior.Rd
man/dot-tidyInputsSE.Rd
man/edgeROne.Rd
man/edgeROneQLF.Rd
man/figures/logo.png
man/getAB.Rd
man/getBF.Rd
man/getExpected.Rd
man/guessEnriched.Rd
man/guessInits.Rd
man/runEdgeR.Rd
man/summarizeRun.Rd
man/summarizeRunOne.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/_snaps/edgeR.md
tests/testthat/_snaps/guessInits.md
tests/testthat/_snaps/plotHelpers.md
tests/testthat/test-beadsRR.R
tests/testthat/test-brew.R
tests/testthat/test-edgeR.R
tests/testthat/test-getAB.R
tests/testthat/test-guessEnriched.R
tests/testthat/test-guessInits.R
tests/testthat/test-plotHelpers.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/beer.Rmd
