hESCdatum2: hESC2 Sample

In aryeelab/sparseHiC: Efficient compression and analysis of Hi-C Data

Description

A sparseHiCdatum object from the ESC replicate 2

Format

A small loops object

sampleName

hESC2

resolutionNamedList

1Mb with chr20-22

metaData

Shows alignment to hg19

Value

A sparseHiCdatum

Source

# hESC2 matrix.files <- paste(system.file("extdata", package = "processedHiCdata"), "HiC-Pro/hESC_Rep2/hESC_Rep2_1000000_iced.matrix", sep = "/") bed.files <- paste(system.file("extdata", package = "processedHiCdata"), "HiC-Pro/hESC_Rep2/hESC_Rep2_1000000_abs.bed", sep = "/") e2 <- import.HiCPro(matrix.files, bed.files, resolutions, sampleName = "hESC1", genomeBuild) hESCdatum2 <- getChromosome(e2, c("chr20", "chr21", "chr22"), FALSE) saveRDS(hESCdatum2, "inst/rds/hESCdatum2.rds")

aryeelab/sparseHiC documentation built on May 12, 2019, 3:43 a.m.