getNeighborhood: finds the neighborhood information.

In arcolombo/imcExperiment: Mass Cytometry S4 Class Structure Pipeline for Images

Description

finds the neighborhood information.

slow assignment for the histoCAT neighborhood data (matrix) columns are the neighbors

Usage

getNeighborhood(object, ...)

## S4 method for signature 'imcExperiment'
getNeighborhood(object)

getNeighborhood(object) <- value

## S4 replacement method for signature 'imcExperiment,matrix'
getNeighborhood(object) <- value

Arguments

object	is IMC container
...	additional arguments
value	matrix rows cells, columns are neighborhood histoCAT output

Value

imcExperiment container

imcExperiment container data(imcdata) getNeighborhood(imcdata)

imcExperiment container

imcExperiment container

Examples

data(imcdata)
getNeighborhood(imcdata)
data(imcdata)
x<-matrix(1,nrow=ncol(imcdata),ncol=2)
getNeighborhood(imcdata)<-x
data(imcdata)
x<-matrix(1,nrow=ncol(imcdata),ncol=2)
getNeighborhood(imcdata)<-x

arcolombo/imcExperiment documentation built on Aug. 21, 2021, 2:59 a.m.