proteome.example: the subset proteome of fruit fly

In alyst/dagLogo: dagLogo

Description

the subset proteome of fruit fly

Usage

data(proteome.example)

Format

An object of Proteome for fly subset proteome. The format is: A list with one data frame and an character.

proteome

'data.frame': 1406 obs. of 4 variables

type

'character': "UniProt"

The format of proteome is

ENTREZ_GENE

a character vector, records entrez gene id

SEQUENCE

a character vector, peptide sequences

ID

a character vector, Uniprot ID

LEN

a character vector, length of peptides

Details

used in the examples Annotation data obtained by: library(UniProt.ws) taxId(UniProt.ws) <- 7227 proteome <- prepareProteome(UniProt.ws) proteome@proteome <- proteome@proteome[sample(1:19902, 1406), ]

Examples

data(proteome.example)
head(proteome.example@proteome)
proteome.example@type

alyst/dagLogo documentation built on May 12, 2019, 2:32 a.m.