planttfhunter-package: planttfhunter: Identification and classification of plant...
In almeidasilvaf/tfhunter: Identification and classification of plant transcription factors
planttfhunter-package R Documentation
planttfhunter: Identification and classification of plant transcription factors
Description
planttfhunter is used to identify plant transcription factors (TFs) from protein sequence data and classify them into families and subfamilies using the classification scheme implemented in PlantTFDB. TFs are identified using pre-built hidden Markov model profiles for DNA-binding domains. Then, auxiliary and forbidden domains are used with DNA-binding domains to classify TFs into families and subfamilies (when applicable). Currently, TFs can be classified in 58 different TF families/subfamilies.
Author(s)
Maintainer: FabrÃcio Almeida-Silva fabricio_almeidasilva@hotmail.com (ORCID)
Authors:
Yves Van de Peer yves.vandepeer@psb.vib-ugent.be (ORCID)
See Also
Useful links:
almeidasilvaf/tfhunter documentation built on March 19, 2023, 8:53 p.m.
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| planttfhunter-package | R Documentation |
planttfhunter: Identification and classification of plant transcription factors
Description
planttfhunter is used to identify plant transcription factors (TFs) from protein sequence data and classify them into families and subfamilies using the classification scheme implemented in PlantTFDB. TFs are identified using pre-built hidden Markov model profiles for DNA-binding domains. Then, auxiliary and forbidden domains are used with DNA-binding domains to classify TFs into families and subfamilies (when applicable). Currently, TFs can be classified in 58 different TF families/subfamilies.
Author(s)
Maintainer: FabrÃcio Almeida-Silva fabricio_almeidasilva@hotmail.com (ORCID)
Authors:
Yves Van de Peer yves.vandepeer@psb.vib-ugent.be (ORCID)
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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