API for almeidasilvaf/syntenet
Inference And Analysis Of Synteny Networks
| Global functions | |
|---|---|
| angiosperm_phylogeny | Man page |
| annotation | Man page |
| binarize_and_transpose | Man page Source code |
| blast_list | Man page |
| blocks_from_collinearity | Source code |
| check_gene_names | Source code |
| check_input | Man page Source code |
| check_list_names | Source code |
| check_ngenes | Source code |
| cluster_network | Man page Source code |
| clusters | Man page |
| collapse_protein_ids | Man page Source code |
| create_species_id_table | Man page Source code |
| custom_palette | Source code |
| diamond_is_installed | Man page Source code |
| edges | Man page |
| edges_from_collinearity | Source code |
| export_sequences | Man page Source code |
| fasta2AAStringSetlist | Man page Source code |
| find_GS_clusters | Man page Source code |
| get_comp | Source code |
| gff2GRangesList | Man page Source code |
| infer_microsynteny_phylogeny | Man page Source code |
| infer_syntenet | Man page Source code |
| interspecies_synteny | Man page Source code |
| intraspecies_synteny | Man page Source code |
| iqtree_is_installed | Man page Source code |
| iqtree_version | Man page Source code |
| is_valid | Source code |
| last_is_installed | Man page Source code |
| network | Man page |
| parse_collinearity | Man page Source code |
| phylogenomic_profile | Man page Source code |
| plot_network | Man page Source code |
| plot_profiles | Man page Source code |
| process_input | Man page Source code |
| profiles2phylip | Man page Source code |
| proteomes | Man page |
| rcpp_mcscanx_file | Man page Source code |
| read_diamond | Man page Source code |
| run_diamond | Man page Source code |
| run_last | Man page Source code |
| scerevisiae_annot | Man page |
| scerevisiae_diamond | Man page |
| species_colors | Source code |
| syntenet | Man page |
| syntenet-package | Man page |
| valid_annot | Source code |
| valid_blast | Source code |
| valid_seq | Source code |
