Files in aiminy/ModifiedDOSE
Disease Ontology Semantic and Enrichment analysis
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/00-AllClasses.R
R/AllGenerics.R
R/DOSE-package.R
R/accessor.R
R/barplot.R
R/build_Anno.R
R/clusterSim.R
R/cnetplot.R
R/doSim.R
R/dotplot.R
R/enrichDGN.R
R/enrichDGNv.R
R/enrichDO.R
R/enrichDisease.R
R/enrichMap.R
R/enrichNCG.R
R/enrichResult.R
R/enricher_internal.R
R/geneSim.R
R/gseAnalyzer.R
R/gsea.R
R/gseaResult.R
R/gsfilter.R
R/mclusterSim.R
R/simplot.R
R/upsetplot.R
R/utilities.R
R/zzz.R
README.Rmd
README.md
appveyor.yml
data/DGN_EXTID2PATHID.rda
data/DGN_PATHID2EXTID.rda
data/DGN_PATHID2NAME.rda
data/DO2ALLEG.rda
data/DO2EG.rda
data/DOIC.rda
data/DOLite2EG.rda
data/DOLiteTerm.rda
data/EG2ALLDO.rda
data/EG2DO.rda
data/EG2DOLite.rda
data/NCG_EXTID2PATHID.rda
data/NCG_PATHID2EXTID.rda
data/NCG_PATHID2NAME.rda
data/VDGN_EXTID2PATHID.rda
data/VDGN_PATHID2EXTID.rda
data/VDGN_PATHID2NAME.rda
data/dotbl.rda
data/geneList.rda
docs/404.html
docs/ChIPseeker/index.html
docs/DOSE/index.html
docs/GOSemSim/index.html
docs/ReactomePA/index.html
docs/base.html
docs/clusterProfiler/index.html
docs/content.html
docs/css/base.css
docs/css/bootstrap-custom.min.css
docs/css/highlight.css
docs/documentation/index.html
docs/emojifont/index.html
docs/featuredArticles/index.html
docs/ggtree/index.html
docs/img/favicon.ico
docs/index.html
docs/js/base.js
docs/js/bootstrap-3.0.3.min.js
docs/js/highlight.pack.js
docs/js/jquery-1.10.2.min.js
docs/meshes/index.html
docs/mkdocs/js/lunr-0.5.7.min.js
docs/mkdocs/js/mustache.min.js
docs/mkdocs/js/require.js
docs/mkdocs/js/search-results-template.mustache
docs/mkdocs/js/search.js
docs/mkdocs/js/text.js
docs/mkdocs/search_index.json
docs/mysoftware/ChIPseeker/index.html
docs/mysoftware/DOSE/index.html
docs/mysoftware/GOSemSim/index.html
docs/mysoftware/ReactomePA/index.html
docs/mysoftware/clusterProfiler/index.html
docs/mysoftware/ggtree/index.html
docs/nav-sub.html
docs/nav.html
docs/sitemap.xml
docs/toc.html
inst/CITATION
inst/extdata/buildAnnoData.R
inst/extdata/build_DGN_Anno.R
inst/extdata/build_NCG_Anno.R
inst/extdata/preparing.geneList.R
man/DOSE-package.Rd
man/DataSet.Rd
man/EXTID2NAME.Rd
man/GSEA_internal.Rd
man/barplot.enrichResult.Rd
man/clusterSim.Rd
man/cnetplot-methods.Rd
man/cnetplot_internal.Rd
man/computeIC.Rd
man/doSim.Rd
man/dotplot-methods.Rd
man/enrichDGN.Rd
man/enrichDGNv.Rd
man/enrichDO.Rd
man/enrichMap.Rd
man/enrichNCG.Rd
man/enrichResult-class.Rd
man/enricher_internal.Rd
man/fortify.enrichResult.Rd
man/fortify.gseaResult.Rd
man/gene2DO.Rd
man/geneID.Rd
man/geneInCategory.Rd
man/geneSim.Rd
man/gseDGN.Rd
man/gseDO.Rd
man/gseNCG.Rd
man/gseaResult-class.Rd
man/gseaplot.Rd
man/gsfilter.Rd
man/list2graph.Rd
man/mclusterSim.Rd
man/netplot.Rd
man/plot-methods.Rd
man/rebuildAnnoData.Rd
man/scaleNodeColor.Rd
man/setReadable.Rd
man/setting.graph.attributes.Rd
man/show-methods.Rd
man/simplot.Rd
man/summary-methods.Rd
man/theme_dose.Rd
man/upsetplot-methods.Rd
mkdocs/docs/ChIPseeker.md
mkdocs/docs/DOSE.md
mkdocs/docs/GOSemSim.md
mkdocs/docs/ReactomePA.md
mkdocs/docs/clusterProfiler.md
mkdocs/docs/documentation.md
mkdocs/docs/emojifont.md
mkdocs/docs/featuredArticles.md
mkdocs/docs/ggtree.md
mkdocs/docs/index.md
mkdocs/docs/meshes.md
mkdocs/mkdocs.yml
mkdocs/mysoftware/ChIPseeker.md
mkdocs/mysoftware/DOSE.md
mkdocs/mysoftware/GOSemSim.md
mkdocs/mysoftware/ReactomePA.md
mkdocs/mysoftware/clusterProfiler.md
mkdocs/mysoftware/emojifont.md
mkdocs/mysoftware/ggtree.md
mkdocs/mysoftware/meshes.md
mkdocs/src/documentation.md
mkdocs/src/featuredArticles.md
mkdocs/src/index.md
tests/testthat.R
tests/testthat/test-doSim.R
tests/testthat/test-gene2DO.R
tests/testthat/test-geneSim.R
vignettes/DOSE.Rmd
vignettes/DOSE.bib
vignettes/GSEA.Rmd
vignettes/enrichmentAnalysis.Rmd
vignettes/figures/cnet_enrichDO.png
vignettes/figures/cnet_gseNCG.png
vignettes/figures/enrichMap_enrichDO.png
vignettes/figures/enrichMap_gseNCG.png
vignettes/figures/upsetplot_enrichDO.png
vignettes/nature.csl
vignettes/semanticAnalysis.Rmd
