PFP: Pathway Fingerprint Framework in R

#'  Pathway fingerprint data of human
#'
#' A dataset containing the pathway maps of KEGG
#' PFPRefnet_hsa is a PFPRefnet class with network(a list of length 338), net_info
# (a datafame, 338rows and 5 columns), the main data is about human.
#'
#'@format A PFPRefnet object, more details see \code{\link{PFPRefnet-class}}
#'
#'@seealso  \code{\link{PFPRefnet-class}}
#'@examples
#'data(PFPRefnet_hsa)
#'@name PFPRefnet_hsa
NULL
#'  Pathway fingerprint data of mouse
#'
#' A dataset containing the pathway maps of KEGG
#' PFPRefnet_mmu  a PFPRefnet class with network(a list of length 334), net_info
#' (a datafame, 334rows and 5 columns), the main data is about mouse.
#'
#'@format A PFPRefnet object, more details see \code{\link{PFPRefnet-class}}
#'@seealso  \code{\link{PFPRefnet-class}}
#'@examples
#'data(PFPRefnet_mmu)
#'@name PFPRefnet_mmu
NULL
#'
#'  PFP_test1
#'
#' A dataset of PFP class
#' a PFP class with pathways_score(a list of length 3), refnet_info
#' (a datafame, 338rows and 3 columns), the main data is about human.
#'
#'@format A PFPRefnet object,
#'
#'@seealso  \code{\link{PFP-class}}
#'@examples
#'data(PFP_test1)
#'@name PFP_test1
NULL
#'
#'  PFP_test2
#'
#' A dataset of PFP class
#'
#' a PFP class with pathways_score(a list of length 3), refnet_info
#' (a datafame, 338rows and 3 columns), the main data is about human.
#'@format A PFPRefnet object,
#'
#'@seealso  \code{\link{PFP-class}}
#'@examples
#'data(PFP_test2)
#'@name PFP_test2
NULL
#' A matrix of counts
#' A dataset of gene expression profile, a large matrix with 21 rows and 2603 
#' columns.
#'
#'@format Gene list obtained by differential gene analysis
#'@examples
#'data(data_std)
#'@name data_std
NULL
#' A gene list of human
#' gene_list_hsa is a array of 40 genetic ENTREZID.
#'
#'@format Gene list obtained by differential gene analysis
#'@examples
#'data(gene_list_hsa)
#'@name gene_list_hsa
NULL
#'  pathway_info
#'  pathway_info is dataframe of the information of pathway, 539rows, 4columns.
#'
#'@format a list
#'
#'@examples
#'data(pathway_info)
#'@name pathway_info
NULL
#'  pathway_info
#'  pathway_info is dataframe of the information of pathway, 539rows, 4columns.
#'
#'@format a list
#'  pathway_info_hsa
#'  pathway_info_hsa is dataframe of the information of pathway, 539rows, 
#'  4columns. The main data is about human.
#'@examples
#'data(pathway_info_hsa)
#'@name pathway_info_hsa
NULL