trans_edges_id: trans_edges_id

In aib-group/PFP: Pathway Fingerprint Framework in R

Description

translate the id name in edges_data

Usage

trans_edges_id(
  edges_data,
  from_type = "ENTREZID",
  to_type = "SYMBOL",
  gene_info_db = NULL
)

Arguments

edges_data,	the edges_data to translate, it can be the data.frame got from get_exp_cor_edges or get_asso_net, or a data.frame contains the same colnames with them.
from_type,	a character,the type of gene ID, "ENSEMBL","GO","SYMBOL" and so on.
to_type,	a character,the type of gene ID, "ENSEMBL","GO","SYMBOL" and so on.
gene_info_db,	a gene

Details

Translate the id name in edges_data. Note, the from_type must be consistent with the genes id type in edges_data. The gene_info_db must be consistent with the species in edges_data

Value

the id of the edges.

Examples

data(PFPRefnet_hsa)
data(gene_list_hsa)
edges_kegg <- get_bg_related_kegg(gene_list_hsa,
                                  PFPRefnet=PFPRefnet_hsa,
                                  rm_duplicated = TRUE)

aib-group/PFP documentation built on Dec. 27, 2020, 1:13 a.m.