R/PFP.R

In aib-group/PFP: Pathway Fingerprint Framework in R

#' The NFP package
#'
#' This package implementation the applications of network finger print method.
#'
#' @name PFP
#' @docType package
#' @importFrom graph nodes edgeL edgeData edgeMatrix
#' @importFrom KEGGgraph parseKGML2Graph nodes<-
#' @importFrom clusterProfiler bitr
#' @importFrom ggplot2 ggplot geom_point geom_segment labs theme aes element_text
#' geom_line ylab xlab guides guide_legend
#' @importFrom plyr llply
#' @importFrom tidyr gather %>%
#' @importFrom stats cor p.adjust shapiro.test t.test wilcox.test phyper
#' @importFrom utils download.file read.csv write.csv
#' @import igraph
#' @import magrittr
#' @import methods
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